Clinical Data Integration — clinicaldataintegration • ClinicoPath

Clinical Data Integration

Usage

clinicaldataintegration(
  data,
  dataSource = "csv",
  patientIdVar,
  dateVars,
  clinicalVars,
  qualityCheck = TRUE,
  completenessThreshold = 80,
  consistencyCheck = TRUE,
  outlierDetection = TRUE,
  terminologyMapping = "none",
  exportFormat = "csv",
  generateReport = TRUE
)

Arguments

data: .
dataSource: .
patientIdVar: .
dateVars: .
clinicalVars: .
qualityCheck: .
completenessThreshold: .
consistencyCheck: .
outlierDetection: .
terminologyMapping: .
exportFormat: .
generateReport: .

Value

A results object containing:

`results$instructions`					a html
`results$overview`					a table
`results$qualityAssessment`					a table
`results$consistencyChecks`					a table
`results$terminologyMapping`					a table
`results$exportSummary`					a html
`results$qualityPlot`					an image

Tables can be converted to data frames with asDF or as.data.frame. For example:

results$overview$asDF

as.data.frame(results$overview)