Dendrogram — dendrogram • ClinicoPath

Dendrogram

Usage

dendrogram(
  data,
  vars,
  clusterMethod = "ward.D2",
  distanceMethod = "euclidean",
  standardize = TRUE,
  showLabels = TRUE,
  colorGroups = FALSE,
  group,
  plotHeight = 600,
  plotWidth = 800,
  plotType = "linear",
  edgeType = "diagonal",
  colorScheme = "default",
  highlightClusters = FALSE,
  nClusters = 3,
  maxLabels = 50,
  showRowDendro = TRUE,
  showColDendro = TRUE,
  heatmapScale = "row",
  heatmapPalette = "bluered",
  showCellBorders = FALSE
)

Arguments

data: .
vars: .
clusterMethod: .
distanceMethod: .
standardize: .
showLabels: .
colorGroups: .
group: .
plotHeight: .
plotWidth: .
plotType: .
edgeType: .
colorScheme: .
highlightClusters: .
nClusters: .
maxLabels: .
showRowDendro: .
showColDendro: .
heatmapScale: .
heatmapPalette: .
showCellBorders: .

Value

A results object containing:

`results$welcome`					a html
`results$plot`					an image
`results$clusterInfo`					a html
`results$summary`					a table
`results$clusterSummary`					a table

Tables can be converted to data frames with asDF or as.data.frame. For example:

results$summary$asDF

as.data.frame(results$summary)