Generates a comprehensive summary of categorical variables including frequency counts, percentages, missing value information, and optional visual summaries. Supports multiple output formats and sorting options for enhanced data exploration.
Super classes
jmvcore::Analysis
-> ClinicoPath::reportcat2Base
-> reportcat2Class
Methods
Inherited methods
jmvcore::Analysis$.createImage()
jmvcore::Analysis$.createImages()
jmvcore::Analysis$.createPlotObject()
jmvcore::Analysis$.load()
jmvcore::Analysis$.render()
jmvcore::Analysis$.save()
jmvcore::Analysis$.savePart()
jmvcore::Analysis$.setCheckpoint()
jmvcore::Analysis$.setParent()
jmvcore::Analysis$.setReadDatasetHeaderSource()
jmvcore::Analysis$.setReadDatasetSource()
jmvcore::Analysis$.setResourcesPathSource()
jmvcore::Analysis$.setStatePathSource()
jmvcore::Analysis$addAddon()
jmvcore::Analysis$asProtoBuf()
jmvcore::Analysis$asSource()
jmvcore::Analysis$check()
jmvcore::Analysis$init()
jmvcore::Analysis$optionsChangedHandler()
jmvcore::Analysis$postInit()
jmvcore::Analysis$print()
jmvcore::Analysis$readDataset()
jmvcore::Analysis$run()
jmvcore::Analysis$serialize()
jmvcore::Analysis$setError()
jmvcore::Analysis$setStatus()
jmvcore::Analysis$translate()
ClinicoPath::reportcat2Base$initialize()
Examples
# \donttest{
# Example 1: Basic categorical summary
data <- data.frame(
treatment = factor(c("A", "B", "A", "C", "B", "A")),
grade = factor(c("High", "Low", "Medium", "High", "Low", "Medium"))
)
result <- reportcat(data = data, vars = c("treatment", "grade"))
#> New names:
#> • `` -> `...1`
#> New names:
#> • `` -> `...1`
#> <div id="giszjhnnhc" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
#> <style>@import url("https://fonts.googleapis.com/css2?family=Lato:ital,wght@0,100;0,200;0,300;0,400;0,500;0,600;0,700;0,800;0,900;1,100;1,200;1,300;1,400;1,500;1,600;1,700;1,800;1,900&display=swap");
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#> }
#>
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#> font-weight: initial;
#> padding-top: 4px;
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#> padding-left: 5px;
#> padding-right: 5px;
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#> border-bottom-width: 0;
#> }
#>
#> #giszjhnnhc .gt_subtitle {
#> color: #333333;
#> font-size: 85%;
#> font-weight: initial;
#> padding-top: 3px;
#> padding-bottom: 5px;
#> padding-left: 5px;
#> padding-right: 5px;
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#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
#> }
#>
#> #giszjhnnhc .gt_bottom_border {
#> border-bottom-style: solid;
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#>
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#> border-top-color: #D3D3D3;
#> border-bottom-style: solid;
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#> border-bottom-color: #D3D3D3;
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#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
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#>
#> #giszjhnnhc .gt_col_heading {
#> color: #333333;
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#> font-size: 80%;
#> font-weight: bolder;
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#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
#> vertical-align: bottom;
#> padding-top: 5px;
#> padding-bottom: 6px;
#> padding-left: 5px;
#> padding-right: 5px;
#> overflow-x: hidden;
#> }
#>
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#> color: #333333;
#> background-color: #FFFFFF;
#> font-size: 80%;
#> font-weight: bolder;
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#>
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#> padding-left: 0;
#> }
#>
#> #giszjhnnhc .gt_column_spanner_outer:last-child {
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#> }
#>
#> #giszjhnnhc .gt_column_spanner {
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#> border-bottom-color: #D3D3D3;
#> vertical-align: bottom;
#> padding-top: 5px;
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#> overflow-x: hidden;
#> display: inline-block;
#> width: 100%;
#> }
#>
#> #giszjhnnhc .gt_spanner_row {
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#>
#> #giszjhnnhc .gt_group_heading {
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#> padding-left: 5px;
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#> font-size: 80%;
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#> border-left-width: 1px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
#> vertical-align: middle;
#> text-align: left;
#> }
#>
#> #giszjhnnhc .gt_empty_group_heading {
#> padding: 0.5px;
#> color: #333333;
#> background-color: #FFFFFF;
#> font-size: 80%;
#> font-weight: bolder;
#> border-top-style: solid;
#> border-top-width: 2px;
#> border-top-color: #D3D3D3;
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> vertical-align: middle;
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#>
#> #giszjhnnhc .gt_from_md > :first-child {
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#>
#> #giszjhnnhc .gt_from_md > :last-child {
#> margin-bottom: 0;
#> }
#>
#> #giszjhnnhc .gt_row {
#> padding-top: 7px;
#> padding-bottom: 7px;
#> padding-left: 5px;
#> padding-right: 5px;
#> margin: 10px;
#> border-top-style: solid;
#> border-top-width: 1px;
#> border-top-color: #F6F7F7;
#> border-left-style: none;
#> border-left-width: 1px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 1px;
#> border-right-color: #D3D3D3;
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#>
#> #giszjhnnhc .gt_stub {
#> color: #333333;
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#> font-weight: bolder;
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#>
#> #giszjhnnhc .gt_stub_row_group {
#> color: #333333;
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#> font-size: 100%;
#> font-weight: initial;
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#> border-right-style: solid;
#> border-right-width: 2px;
#> border-right-color: #D3D3D3;
#> padding-left: 5px;
#> padding-right: 5px;
#> vertical-align: top;
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#>
#> #giszjhnnhc .gt_row_group_first td {
#> border-top-width: 2px;
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#>
#> #giszjhnnhc .gt_row_group_first th {
#> border-top-width: 2px;
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#>
#> #giszjhnnhc .gt_summary_row {
#> color: #333333;
#> background-color: #FFFFFF;
#> text-transform: inherit;
#> padding-top: 8px;
#> padding-bottom: 8px;
#> padding-left: 5px;
#> padding-right: 5px;
#> }
#>
#> #giszjhnnhc .gt_first_summary_row {
#> border-top-style: solid;
#> border-top-color: #D3D3D3;
#> }
#>
#> #giszjhnnhc .gt_first_summary_row.thick {
#> border-top-width: 2px;
#> }
#>
#> #giszjhnnhc .gt_last_summary_row {
#> padding-top: 8px;
#> padding-bottom: 8px;
#> padding-left: 5px;
#> padding-right: 5px;
#> border-bottom-style: solid;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> }
#>
#> #giszjhnnhc .gt_grand_summary_row {
#> color: #333333;
#> background-color: #FFFFFF;
#> text-transform: inherit;
#> padding-top: 8px;
#> padding-bottom: 8px;
#> padding-left: 5px;
#> padding-right: 5px;
#> }
#>
#> #giszjhnnhc .gt_first_grand_summary_row {
#> padding-top: 8px;
#> padding-bottom: 8px;
#> padding-left: 5px;
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#>
#> #giszjhnnhc .gt_last_grand_summary_row_top {
#> padding-top: 8px;
#> padding-bottom: 8px;
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#>
#> #giszjhnnhc .gt_striped {
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#>
#> #giszjhnnhc .gt_table_body {
#> border-top-style: solid;
#> border-top-width: 2px;
#> border-top-color: #D3D3D3;
#> border-bottom-style: solid;
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#> border-bottom-color: #D3D3D3;
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#>
#> #giszjhnnhc .gt_footnotes {
#> color: #333333;
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#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> border-left-style: none;
#> border-left-width: 2px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 2px;
#> border-right-color: #D3D3D3;
#> }
#>
#> #giszjhnnhc .gt_footnote {
#> margin: 0px;
#> font-size: 90%;
#> padding-top: 4px;
#> padding-bottom: 4px;
#> padding-left: 5px;
#> padding-right: 5px;
#> }
#>
#> #giszjhnnhc .gt_sourcenotes {
#> color: #333333;
#> background-color: #FFFFFF;
#> border-bottom-style: none;
#> border-bottom-width: 2px;
#> border-bottom-color: #D3D3D3;
#> border-left-style: none;
#> border-left-width: 2px;
#> border-left-color: #D3D3D3;
#> border-right-style: none;
#> border-right-width: 2px;
#> border-right-color: #D3D3D3;
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#>
#> #giszjhnnhc .gt_sourcenote {
#> font-size: 12px;
#> padding-top: 4px;
#> padding-bottom: 4px;
#> padding-left: 5px;
#> padding-right: 5px;
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#>
#> #giszjhnnhc .gt_left {
#> text-align: left;
#> }
#>
#> #giszjhnnhc .gt_center {
#> text-align: center;
#> }
#>
#> #giszjhnnhc .gt_right {
#> text-align: right;
#> font-variant-numeric: tabular-nums;
#> }
#>
#> #giszjhnnhc .gt_font_normal {
#> font-weight: normal;
#> }
#>
#> #giszjhnnhc .gt_font_bold {
#> font-weight: bold;
#> }
#>
#> #giszjhnnhc .gt_font_italic {
#> font-style: italic;
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#>
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#>
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#>
#> #giszjhnnhc .gt_indent_1 {
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#>
#> #giszjhnnhc .gt_indent_2 {
#> text-indent: 10px;
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#>
#> #giszjhnnhc .gt_indent_3 {
#> text-indent: 15px;
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#>
#> #giszjhnnhc .gt_indent_4 {
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#>
#> #giszjhnnhc .gt_indent_5 {
#> text-indent: 25px;
#> }
#>
#> #giszjhnnhc .katex-display {
#> display: inline-flex !important;
#> margin-bottom: 0.75em !important;
#> }
#>
#> #giszjhnnhc div.Reactable > div.rt-table > div.rt-thead > div.rt-tr.rt-tr-group-header > div.rt-th-group:after {
#> height: 0px !important;
#> }
#> </style>
#> <table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
#> <thead>
#> <tr class="gt_heading">
#> <td colspan="4" class="gt_heading gt_title gt_font_normal" style>.</td>
#> </tr>
#> <tr class="gt_heading">
#> <td colspan="4" class="gt_heading gt_subtitle gt_font_normal gt_bottom_border" style>6 rows x 2 cols</td>
#> </tr>
#> <tr class="gt_col_headings">
#> <th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="type"></th>
#> <th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="name">Column</th>
#> <th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="value">Plot Overview</th>
#> <th class="gt_col_heading gt_columns_bottom_border gt_right" rowspan="1" colspan="1" scope="col" id="n_missing">Missing</th>
#> </tr>
#> </thead>
#> <tbody class="gt_table_body">
#> <tr><td headers="type" class="gt_row gt_left"><svg aria-hidden="true" role="img" viewBox="0 0 512 512" style="height:20px;width:20px;vertical-align:-0.125em;margin-left:auto;margin-right:auto;font-size:inherit;fill:#4e79a7;overflow:visible;position:relative;"><path d="M40 48C26.7 48 16 58.7 16 72v48c0 13.3 10.7 24 24 24H88c13.3 0 24-10.7 24-24V72c0-13.3-10.7-24-24-24H40zM192 64c-17.7 0-32 14.3-32 32s14.3 32 32 32H480c17.7 0 32-14.3 32-32s-14.3-32-32-32H192zm0 160c-17.7 0-32 14.3-32 32s14.3 32 32 32H480c17.7 0 32-14.3 32-32s-14.3-32-32-32H192zm0 160c-17.7 0-32 14.3-32 32s14.3 32 32 32H480c17.7 0 32-14.3 32-32s-14.3-32-32-32H192zM16 232v48c0 13.3 10.7 24 24 24H88c13.3 0 24-10.7 24-24V232c0-13.3-10.7-24-24-24H40c-13.3 0-24 10.7-24 24zM40 368c-13.3 0-24 10.7-24 24v48c0 13.3 10.7 24 24 24H88c13.3 0 24-10.7 24-24V392c0-13.3-10.7-24-24-24H40z"/></svg></td>
#> <td headers="name" class="gt_row gt_left" style="font-weight: bold;"><div style='max-width: 150px;'>
#> <details style='font-weight: normal !important;'>
#> <summary style='font-weight: bold !important;'>treatment</summary>
#> A, B and C
#> </details></div></td>
#> <td headers="value" class="gt_row gt_center"><?xml version='1.0' encoding='UTF-8' ?><svg xmlns='http://www.w3.org/2000/svg' xmlns:xlink='http://www.w3.org/1999/xlink' width='141.73pt' height='34.02pt' viewBox='0 0 141.73 34.02'><g class='svglite'><defs> <style type='text/css'><![CDATA[ .svglite line, .svglite polyline, .svglite polygon, .svglite path, .svglite rect, .svglite circle { fill: none; stroke: #000000; stroke-linecap: round; stroke-linejoin: round; stroke-miterlimit: 10.00; } .svglite text { white-space: pre; } .svglite g.glyphgroup path { fill: inherit; stroke: none; } ]]></style></defs><rect width='100%' height='100%' style='stroke: none; fill: none;'/><defs> <clipPath id='cpMC4wMHwxNDEuNzN8MC4wMHwzNC4wMg=='> <rect x='0.00' y='0.00' width='141.73' height='34.02' /> </clipPath></defs><g clip-path='url(#cpMC4wMHwxNDEuNzN8MC4wMHwzNC4wMg==)'></g><defs> <clipPath id='cpMS4wMHwxNDAuNzR8Mi45OXwyMy42MQ=='> <rect x='1.00' y='2.99' width='139.74' height='20.62' /> </clipPath></defs><g clip-path='url(#cpMS4wMHwxNDAuNzR8Mi45OXwyMy42MQ==)'><rect x='117.45' y='3.93' width='23.29' height='18.75' style='stroke-width: 1.07; stroke: none; stroke-linecap: butt; stroke-linejoin: miter; fill: #DDEAF7;' /><rect x='70.87' y='3.93' width='46.58' height='18.75' style='stroke-width: 1.07; stroke: none; stroke-linecap: butt; stroke-linejoin: miter; fill: #91B4DA;' /><rect x='1.00' y='3.93' width='69.87' height='18.75' style='stroke-width: 1.07; stroke: none; stroke-linecap: butt; stroke-linejoin: miter; fill: #3181BD;' /></g><g clip-path='url(#cpMC4wMHwxNDEuNzN8MC4wMHwzNC4wMg==)'><text x='1.00' y='30.18' style='font-size: 8.00px; font-family: "Arial";' textLength='43.61px' lengthAdjust='spacingAndGlyphs'>3 categories</text></g></g></svg></td>
#> <td headers="n_missing" class="gt_row gt_right">0.0%</td></tr>
#> <tr><td headers="type" class="gt_row gt_left gt_striped"><svg aria-hidden="true" role="img" viewBox="0 0 512 512" style="height:20px;width:20px;vertical-align:-0.125em;margin-left:auto;margin-right:auto;font-size:inherit;fill:#4e79a7;overflow:visible;position:relative;"><path d="M40 48C26.7 48 16 58.7 16 72v48c0 13.3 10.7 24 24 24H88c13.3 0 24-10.7 24-24V72c0-13.3-10.7-24-24-24H40zM192 64c-17.7 0-32 14.3-32 32s14.3 32 32 32H480c17.7 0 32-14.3 32-32s-14.3-32-32-32H192zm0 160c-17.7 0-32 14.3-32 32s14.3 32 32 32H480c17.7 0 32-14.3 32-32s-14.3-32-32-32H192zm0 160c-17.7 0-32 14.3-32 32s14.3 32 32 32H480c17.7 0 32-14.3 32-32s-14.3-32-32-32H192zM16 232v48c0 13.3 10.7 24 24 24H88c13.3 0 24-10.7 24-24V232c0-13.3-10.7-24-24-24H40c-13.3 0-24 10.7-24 24zM40 368c-13.3 0-24 10.7-24 24v48c0 13.3 10.7 24 24 24H88c13.3 0 24-10.7 24-24V392c0-13.3-10.7-24-24-24H40z"/></svg></td>
#> <td headers="name" class="gt_row gt_left gt_striped" style="font-weight: bold;"><div style='max-width: 150px;'>
#> <details style='font-weight: normal !important;'>
#> <summary style='font-weight: bold !important;'>grade</summary>
#> High, Low and Medium
#> </details></div></td>
#> <td headers="value" class="gt_row gt_center gt_striped"><?xml version='1.0' encoding='UTF-8' ?><svg xmlns='http://www.w3.org/2000/svg' xmlns:xlink='http://www.w3.org/1999/xlink' width='141.73pt' height='34.02pt' viewBox='0 0 141.73 34.02'><g class='svglite'><defs> <style type='text/css'><![CDATA[ .svglite line, .svglite polyline, .svglite polygon, .svglite path, .svglite rect, .svglite circle { fill: none; stroke: #000000; stroke-linecap: round; stroke-linejoin: round; stroke-miterlimit: 10.00; } .svglite text { white-space: pre; } .svglite g.glyphgroup path { fill: inherit; stroke: none; } ]]></style></defs><rect width='100%' height='100%' style='stroke: none; fill: none;'/><defs> <clipPath id='cpMC4wMHwxNDEuNzN8MC4wMHwzNC4wMg=='> <rect x='0.00' y='0.00' width='141.73' height='34.02' /> </clipPath></defs><g clip-path='url(#cpMC4wMHwxNDEuNzN8MC4wMHwzNC4wMg==)'></g><defs> <clipPath id='cpMS4wMHwxNDAuNzR8Mi45OXwyMy42MQ=='> <rect x='1.00' y='2.99' width='139.74' height='20.62' /> </clipPath></defs><g clip-path='url(#cpMS4wMHwxNDAuNzR8Mi45OXwyMy42MQ==)'><rect x='94.16' y='3.93' width='46.58' height='18.75' style='stroke-width: 1.07; stroke: none; stroke-linecap: butt; stroke-linejoin: miter; fill: #DDEAF7;' /><rect x='47.58' y='3.93' width='46.58' height='18.75' style='stroke-width: 1.07; stroke: none; stroke-linecap: butt; stroke-linejoin: miter; fill: #91B4DA;' /><rect x='1.00' y='3.93' width='46.58' height='18.75' style='stroke-width: 1.07; stroke: none; stroke-linecap: butt; stroke-linejoin: miter; fill: #3181BD;' /></g><g clip-path='url(#cpMC4wMHwxNDEuNzN8MC4wMHwzNC4wMg==)'><text x='1.00' y='30.18' style='font-size: 8.00px; font-family: "Arial";' textLength='43.61px' lengthAdjust='spacingAndGlyphs'>3 categories</text></g></g></svg></td>
#> <td headers="n_missing" class="gt_row gt_right gt_striped">0.0%</td></tr>
#> </tbody>
#>
#>
#> </table>
#> </div>
# Example 2: Enhanced summary with cumulative percentages
result_enhanced <- reportcat(
data = data,
vars = "treatment",
sumvar_style = TRUE,
show_proportions = TRUE
)
#> Error in reportcat(data = data, vars = "treatment", sumvar_style = TRUE, show_proportions = TRUE): unused arguments (sumvar_style = TRUE, show_proportions = TRUE)
# Example 3: Sort categories by frequency
result_sorted <- reportcat(
data = data,
vars = "grade",
sort_by_frequency = TRUE
)
#> Error in reportcat(data = data, vars = "grade", sort_by_frequency = TRUE): unused argument (sort_by_frequency = TRUE)
# }