Venn Diagram — venn • ClinicoPath

Venn Diagram

Usage

venn(
  data,
  var1,
  var1true,
  var2,
  var2true,
  var3,
  var3true,
  var4,
  var4true,
  upsetType = "upsetR",
  sortBy = "freq",
  minSize = 0,
  showAnnotations = FALSE
)

Arguments

data: The dataset as a data frame containing the variables for analysis.
var1: A string naming the primary variable from data for the diagram.
var1true: The level in var1 that represents the positive condition.
var2: A string naming the secondary variable from data used in the diagram.
var2true: The level in var2 that represents the positive condition.
var3: An optional variable from data to include in the diagram.
var3true: The level in var3 that represents the positive condition.
var4: An optional variable from data for additional overlap analysis.
var4true: The level in var4 that represents the positive condition.
upsetType: Choose between UpSetR (classic) or ComplexUpset (advanced with more features).
sortBy: How to sort the intersections in the UpSet plot.
minSize: Minimum size of intersections to display.
showAnnotations: Add statistical annotations to the ComplexUpset plot.

Value

A results object containing:

`results$todo`					a html
`results$summary`					a table
`results$plot`					an image
`results$plot2`					an image

Tables can be converted to data frames with asDF or as.data.frame. For example:

results$summary$asDF

as.data.frame(results$summary)