Complex UpSet Plot Visualization
Usage
jcomplexupset(
data,
set_vars,
value_var = NULL,
min_size = 0,
max_degree = 4,
sort_by = "cardinality",
sort_order = "descending",
keep_empty_groups = FALSE,
set_size_show = TRUE,
intersection_size_show = TRUE,
show_percentages = FALSE,
annotations = "intersection_size",
base_annotations_height = 2,
intersections_height = 3,
sets_width = 2,
color_palette = "Set2",
theme_style = "theme_minimal",
matrix_color = "black",
bar_color = "steelblue",
text_size = 12,
plot_title = "",
plot_subtitle = "",
show_statistics = TRUE,
show_interpretation = TRUE,
width_ratio = 0.3,
height_ratio = 0.7
)Arguments
- data
R object to use
- set_vars
Variables representing set membership (binary columns)
- value_var
Optional variable for weighting intersections
- min_size
Minimum size for intersections to be displayed
- max_degree
Maximum number of sets in intersection
- sort_by
Method for sorting intersections
- sort_order
Order for sorting intersections
- keep_empty_groups
Show intersections with zero size
- set_size_show
Display individual set sizes
- intersection_size_show
Display intersection size values
- show_percentages
Display percentages instead of counts
- annotations
Type of annotation to add
- base_annotations_height
Height of annotation panels
- intersections_height
Height of intersections panel
- sets_width
Width of sets panel
- color_palette
Color palette for visualization
- theme_style
ggplot2 theme style
- matrix_color
Color for intersection matrix dots
- bar_color
Color for bars in plots
- text_size
Size of text elements
- plot_title
Title for the plot
- plot_subtitle
Subtitle for the plot
- show_statistics
Display summary statistics
- show_interpretation
Display result interpretation
- width_ratio
Ratio of sets width to total width
- height_ratio
Ratio of intersections height to total height